What is your 'deleted files' policy? How long do you keep them? I had a similar issue but then found out that the nextcloud cron-process wasn't running so files in the 'deleted files' folder where never really deleted.
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Simplenote, Notesnook, Obsidian.
Obsidian sync isn't free, and it's easy to violate their license if you mix work and personal notes.
I think Joplin tends to be better than most. If Obsidian was licensed and charged differently I might change my mind.
I self host Outline with storage connected to a Minio instance that I use as S3 storage for several applications.
I loved the ability of writing in markdown form, but a simple and intuitive design, with the ability to share a whole collection, a subset of pages, or a single page publicly without dealing with a bunch of overhead.