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Also new to this, would having GPU decode on the server allegivate the decode issue?
Not sure about Jellyfin, but Plex would transcode to a format supported by the client yes.
So long as the stream that the pi is receiving can be decoded in HW you're fine. But if you're streaming e.g. a raw VC1 Blu-ray rip, I think things will work much better on a pi 3 than 4 (though you still need to purchase the codec license for HW decode on a 3).
But yeah, if the server is transcoding to HEVC or h264 in real time (or again, the source material is already in that format), then the 4 should be good.